• Skip to Content
  • Skip to Main Navigation
  • Skip to Search

Indiana University Bloomington Indiana University Bloomington IU Bloomington

Open Search
  • About
    • Vision & Mission
    • Leadership
    • Diversity & Inclusion
      • The Luddy Office of Diversity and Inclusion (LODI)
      • D&I Task Force
    • Dean’s Advisory Council
    • Luddy Hall & Facilities
    • Faculty Openings
    • Fred Luddy
  • Admissions
    • How to Apply
      • Freshman Applicants
      • Transfer Applicants
      • Returning and Second Degree Students
      • Change or Declare Your Major
    • Direct Admission
      • Direct Admit Scholarships
    • Plan a Visit
    • Cost & Financial Aid
    • Scholarships
    • Living Learning Center
    • Student Ambassadors
  • Academics
    • Undergraduate Programs
    • Graduate Programs
      • Doctoral Programs
      • Ph.D. Minors
      • Master's Programs
      • Certificates
      • LIS Specialist
      • Training Grants
      • Graduate Forms
        • Apply to Graduate
    • Departments
    • Courses
    • Undergraduate Advising & Tutoring
    • International Student Support
    • Academic Opportunities
    • Innovation & Entrepreneurship
      • GT-IDEA
  • Student Life
    • Student Organizations
    • Pacesetters
    • Pre-College Summer Programs
    • Student Recognition Celebration
  • Research
    • Faculty Directory
    • Research Centers
    • Research Areas
    • Student Research
      • Student Research and Project Demo Week
      • Research Experiences for Undergraduates (REU)
      • Summer Research Opportunities
      • Summer Research Fellowship for International Students
      • Cyber ROTC
  • Careers
    • Hire Our Students
      • Recruit Luddy Students
      • Career Fair
      • Hiring International Students
    • Services
    • Career Outcome Data
    • Career Fairs & Events
    • Alumni Services
  • Alumni & Giving
    • Ways to Give
      • Name an Auditorium Chair
      • Corporate Partnerships
      • Student Gifts
    • Get Involved
    • Submit Alumni News
    • Alumni Board
    • Alumni Awards
  • Contact
    • Request Information
    • People Directory
  • People
  • News
  • Events
    • Plan and Add Events

Luddy School of
Informatics, Computing, and Engineering

  • Home
  • About
    • Vision & Mission
    • Leadership
    • Diversity & Inclusion
    • Dean’s Advisory Council
    • Luddy Hall & Facilities
    • Faculty Openings
    • Fred Luddy
  • Admissions
    • How to Apply
    • Direct Admission
    • Plan a Visit
    • Cost & Financial Aid
    • Scholarships
    • Living Learning Center
    • Student Ambassadors
  • Academics
    • Undergraduate Programs
    • Graduate Programs
    • Departments
    • Courses
    • Undergraduate Advising & Tutoring
    • International Student Support
    • Academic Opportunities
    • Innovation & Entrepreneurship
  • Student Life
    • Student Organizations
    • Pacesetters
    • Pre-College Summer Programs
    • Student Recognition Celebration
  • Research
    • Faculty Directory
    • Research Centers
    • Research Areas
    • Student Research
  • Careers
    • Hire Our Students
    • Services
    • Career Outcome Data
    • Career Fairs & Events
    • Alumni Services
  • Alumni & Giving
    • Ways to Give
    • Get Involved
    • Submit Alumni News
    • Alumni Board
    • Alumni Awards
  • Contact
    • Request Information
    • People Directory
  • Search
  • People
  • News
  • Events

James P Sluka

Research Scientist, The Biocomplexity Institute

Contact Information

jsluka@indiana.edu
(812) 855-2441
MESH (2425 N. Milo B Sampson Ln) 134K

Education

  • PhD in Chemistry at California Insitute of Technology, 1987
  • MS in Chemistry at San Jose State University, 1982
  • BS in Chemistry at San Jose State University, 1980

Biography

2018 Clendenon SG, Fu X, Von Hoene RA, Clendenon JL, Sluka JP, Winfree S, Mang H, Martinez M, Filson AJ, Klaunig JE, Glazier JA, Dunn KW. A simple automated method for continuous fieldwise measurement of microvascular hemodynamics. Microvasc Res. 2019 May;123:7-13. doi: 10.1016/j.mvr.2018.11.010. Epub 2018 Nov 28. PubMed PMID: 30502365; PubMed Central PMCID: PMC6379124.

2016 JP Sluka, X Fu, M Swat, JM Belmonte, A Cosmanescu, SG Clendenon, JF Wambaugh and JA Glazier “A Liver-centric Multiscale Modeling Framework for Xenobiotics”, PLoS One. 2016 Sep 16;11(9):e0162428. doi: 10.1371/journal.pone.0162428. “2016 Best Biological Modeling Paper Award” from the Biological Modeling Specialty Section of the Society of Toxicology.

2016 CE Clancy, G An, WR Cannon, Y Liu, EE May, P Ortoleva, AS Popel, JP Sluka, J Su, P Vicini, X Zhou and DM Eckmann “Multiscale Modeling in the Clinic: Drug Design and Development”, Annals of Biomedical Engineering, 2016 Feb 17; PMID: 26885640.

2016 JF Wambaugh, BA Wetmore, R Pearce, C Strope, R Goldsmith, J Sluka, A Sedykh, A Tropsha, S Bosgra, I Shah, R Judson, RS Thomas, and RW Setzer “Toxicokinetic Triage for Environmental Chemicals”, Toxicological Sciences, 147(1):55-67. PMID: 26085347. “Honorable Mention, Society of Toxicology, Toxicological Sciences Paper of the Year Award 2016.”

2016 Somogyi E, Sluka JP, Glazier JA. 2016. Formalizing knowledge in multi-scale agent based simulations. In Proceedings of the ACM/IEEE 19th International Conference on Model Driven Engineering Languages and Systems (MODELS ’16). ACM, New York, NY, USA, 115-122. DOI: https://doi.org/10.1145/2976767.2976790

2014 Sluka, J, Shirinifard A, Swat M, Cosmanescu A, Heiland R, and Glazier JA “The Cell Behavior Ontology: Describing the intrinsic biological behaviors of real and model cells seen as active agents”, Bioinformatics, 30:16, 2367-2374; doi: 10.1093/bioinformatics/ btu210.

2012 Sluka, JP, Glazier, JA, Swat, M “Infrastructure requirements for moving multiscale modeling from research tools to the clinical and regulatory domains”, in VPH NoE Newsletter,7, January 2012.

2012 R Heiland, M Swat, J Sluka, B Zaitlen, A Shirinifard, GL Thomas, A Lumsdaine, and J.A. Glazier. “Visualizing Cells and their Connectivity Graphs for CompuCell3D”. Biological Data Visualization (BioVis), 2012 IEEE Symposium on , pp.85-90, 14-15 Oct. 2012. doi: 10.1109/BioVis. 2012.6378597.

2001-2007 J Sluka, “PDQ_MED A software package for efficient mining of the biomedical literature in conjunction with ’Ohmics experiments”. Commercial software package. Customers included the National Institute of Environmental Health Sciences (NIEHS), MD Anderson Cancer Center, Duke University, Merck, Eli Lily, and Amgen.

2002 Dodge, JA, Jones, CD, Marron, K, Sluka, JP, Stocksdale, MG, “Compounds and compositions with nitrogen-containing non-basic side chains”, US Patent 6,444,688, Issued Sept. 3, 2002.

1999 Schmid, CR, Sluka, JP, Duke, KM, Glasebrook, AW “Novel nonsteroidal selective estrogen receptor modulators. Carbon and heteroatom replacement of oxygen in the ethoxypiperidine region of raloxifene”, Bioorganic and Medicinal Chemistry Letters 9, 523–528. (PMID: 10098655)

1998 Miles, RM, Turner, CH, Santerre, R, Tu, Y, McClelland, ., Argot, J, DeHoff, BS, Mundy, CW, Rosteck, PR Jr., Bidwell, J, Sluka, JP, Hock, J, Onyia, J. “Analysis of differential gene expression in rat tibia after osteogenic stimulus in vivo: mechanical loading regulates Osteopontin and Myeloperoxidase”, Journal of Cellular Biochemistry 68, 355–365.

1997 Grese, TA, Sluka, JP, Bryant, HU, Cullinan, GJ, Glasebrook, AL, Jones, CD, Matsumoto, K, Palkowitz, AD, Termine, JD, Winter, M., Yang, NN, Dodge, JA “Molecular determinants of tissue selectivity in estrogen receptor modulators”, Proceedings of the National Academy of Sciences USA 94, 14105–14110.(PMID: 9391160)

1990 Sluka, JP, Horvath, SJ, Glasglow, AC, Simon, MI, Dervan, PB “The Importance of Minor Groove Contacts in the Recognition of DNA by the DNA Binding Domain 3 of Hin Recombinase”, Biochemistry 29, 6551–6561. (PMID: 2204415)

1990 Sluka, JP, Griffin, JH, Mack, DP, Dervan, PB “Reagents and Methods for the Solid Phase Synthesis of Protein-EDTA for Use in Affinity Cleaving” Journal of the American Chemical Society 112, 6369–6374.

1987 Sluka, JP, Bruist, MF Horvath, SJ, Simon, MI, Dervan, PB “Synthesis of a Sequence Specific DNA Cleaving Peptide”, Science 238, 1129. (PMID: 3120311)

    Centers

    • The Biocomplexity Institute
    Update your profile
    • Request Information
    • People Directory

    Luddy School of Informatics, Computing, and Engineering resources and social media channels

    • Faculty & Staff Intranet
    • Service Requests
    • Twitter
    • Facebook
    • Instagram
    • YouTube
    • LinkedIn

    Indiana University

    Accessibility | Privacy Notice | Copyright © 2021 The Trustees of Indiana University